Set up for HPC
Prerequisites¶
conda
likes to install its own version of MPI, which frequently causes issues on HPC clusters. To get around that, first, load your HPC's MPI module. Save the path to the mpicc
executable in an environment variable.
Install the Code¶
Now you can pip
install as shown here
singularity Container¶
singularity is widely supported on HPC systems. Assuming you have a singularity module available to you, you can follow the instructions here